[chimerax-users] Re: color bfactor by alphafold palette

Here's the command with AF color hex codes from the AF3 server website color bfactor palette 0,#ef821e:49.99,#ef821e:50,#f6ed12:69.99,#f6ed12:70,#10cff1:89.99,#10cff1:90,#106dff:100,#106dff key true Now it's very close except I'm noticing that some small regions colored very high confidence by AF3 look just confident in Chimerax. Digging into it a bit, it seems the difference is that AF3 colors a residue by either the max bfactor of its atoms or maybe averages just the main-chain atoms. ChimeraX averages all atoms of a residue to color the cartoon, so a couple of C-delta atoms in the 80's is sometimes enough to bring the whole residue below 90. I'm guessing there's not way to match that AF behavior