Hi Suzie, In addition to all the excellent resources Ellen pointed you to, you can also find more example .cxc scripts from my work here: https://github.com/Guillawme/chimerax-viz I hope this helps! Cheers, Guillaume On 20 Jun 2024, at 18:15, Jisoo Hwang via ChimeraX-users <chimerax-users@cgl.ucsf.edu<mailto:chimerax-users@cgl.ucsf.edu>> wrote: Dear Elaine, I see, thanks for the resources! Hope you have a nice rest of your week:) Best, Suzie Get Outlook for iOS<https://aka.ms/o0ukef> ________________________________ From: Elaine Meng <meng@cgl.ucsf.edu<mailto:meng@cgl.ucsf.edu>> Sent: Thursday, June 20, 2024 11:28:17 AM To: Jisoo Hwang <jhwang59@jhmi.edu<mailto:jhwang59@jhmi.edu>> Cc: chimerax-users@cgl.ucsf.edu<mailto:chimerax-users@cgl.ucsf.edu> <chimerax-users@cgl.ucsf.edu<mailto:chimerax-users@cgl.ucsf.edu>> Subject: Re: [chimerax-users] ChimeraX workshop External Email - Use Caution We generally don't have time/personnel for individual video chats with users, sorry. In addition to the complete User Guide, there are lots of tutorials and example images (with scripts) for ChimeraX on the website. User Guide <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimerax%2Fdocs%2Fuser%2Findex.html&data=05%7C02%7Cjhwang59%40jhmi.edu%7Cd9215b16ab334c645feb08dc913da5c1%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C638544941164697359%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=Xf8Ca5qzh3%2BN9Gd7KWL44nXlJBhcaA3RhPoDoP5CnnA%3D&reserved=0<https://www.rbvi.ucsf.edu/chimerax/docs/user/index.html>> Tutorials <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimerax%2Ftutorials.html&data=05%7C02%7Cjhwang59%40jhmi.edu%7Cd9215b16ab334c645feb08dc913da5c1%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C638544941164707034%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=rlrg94jtWgp8s7z67nNeS76IkjrYkZme7e%2FvyIiECGY%3D&reserved=0<https://www.rbvi.ucsf.edu/chimerax/tutorials.html>> Example images and ChimeraX command scripts (.cxc files) that go with them <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimerax%2Ffeatures.html&data=05%7C02%7Cjhwang59%40jhmi.edu%7Cd9215b16ab334c645feb08dc913da5c1%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C638544941164712059%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=l5bH2el737RPvxV0dxjK3AwgRmI2F70rN739rSxqI8w%3D&reserved=0<https://www.rbvi.ucsf.edu/chimerax/features.html>> <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimerax%2Fgallery.html&data=05%7C02%7Cjhwang59%40jhmi.edu%7Cd9215b16ab334c645feb08dc913da5c1%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C638544941164716628%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=kKVcZK9fWd31yDUNrmrB7dfqlFLOX408Vqf6WZsHsnY%3D&reserved=0<https://www.rbvi.ucsf.edu/chimerax/gallery.html>> ...there are many other presentations, videos, etc. as well, see the quick links on the homepage. <https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimerax%2Findex.html&data=05%7C02%7Cjhwang59%40jhmi.edu%7Cd9215b16ab334c645feb08dc913da5c1%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C638544941164721208%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=POJo%2B2fV0YtshOOTj6%2Fkd%2BDG2r4YPLa9c9nVVXNq6Xk%3D&reserved=0<https://www.rbvi.ucsf.edu/chimerax/index.html>> If you have specific questions (how to do X, Y, or Z?) you can of course ask on this chimerax-users@cgl.ucsf.edu<mailto:chimerax-users@cgl.ucsf.edu> mailing list. Regards Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Jun 20, 2024, at 6:44 AM, Jisoo Hwang via ChimeraX-users <chimerax-users@cgl.ucsf.edu<mailto:chimerax-users@cgl.ucsf.edu>> wrote:
To whom it may concern,
Good afternoon! I hope this email finds you well. I’m a student doing research at Johns Hopkins and was wondering if it’ll be possible for us to set up a zoom meeting to ask some questions about the software. It’s my first time using the software and it would be incredibly helpful if we can have a short workshop going over the features of ChimeraX. We’re trying to include a 3D structure in a paper that we’re planning on publishing soon. Please let me know if there’s any other resource that you can point us to if we can’t do a zoom meeting. Thank you so much for your help!
Best, Suzie Hwang
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