Dear Natsuki, Sorry no, ChimeraX does not have a tool to run Autodock Vina. However, if you run Autodock Vina some other way (not in ChimeraX), you can open the output file in ChimeraX and use the ViewDockX tool to view and analyze the results: <https://rbvi.ucsf.edu/chimerax/docs/user/tools/viewdockx.html> ** Please also note that the Autodock Vina tool in Chimera is NOT recommended for most research purposes because the Chimera GUI settings only allow a very small amount of sampling. ** <https://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html> For a more complete Autodock Vina calculation, you would need to run Autodock Vina directly (not using Chimera). See the Autodock Vina website: <https://vina.scripps.edu/> Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 18, 2023, at 11:29 PM, ODA Natsuki via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear all, Thank you for providing the license for ChimeraX. I have a question about ChimeraX for using Autodock Vina.
Is it possible to use Autodock Vina at ChimeraX? I used to use Autodock Vina at Chimera before version of ChimeraX. I want to use Autodock Vina, so would you ask me the methods?
Sincerely you. Natsuki