On Mar 24, 2024, at 12:52 PM, qz.chen--- via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hi,

I want to use ChimeraX to visualize the protein slab simulation in the condensed phase as the link below. Unlike typical protein simulations, simulations of the condensed phase slab often need to keep the atoms inside the box for more accurate visualization. This means that particles between proteins may be jumping, leading to unreasonable lines appearing in the visualization. I have not found a way to adjust this in ChimeraX.

https://www.biorxiv.org/content/10.1101/2020.08.05.237008v1.full

Is there a way to limit the maximum distance between carbon and bond among particles?

Thanks!
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