Dear ChimeraX wizards,

I was trying to generate hbond analysis via nogui, by issuing "chimerax --nogui --script "myscript.cxc",

where in the script I put the following commands:

open /Users/visvaldas/temp0000.pdb

select /B
hbonds sel saveFile /Users/visvaldas/temp00.hbonds restrict cross batch true

quit

However, something is wrong with hbonds line since I am getting this error:

Executing: runscript myscript.cxc
Traceback (most recent call last):
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/scripting.py", line 83, in open_python_script
    code = compile(data, stream.name, 'exec')
File "myscript.cxc", line 4
    hbonds sel saveFile /Users/visvaldas/temp00.hbonds restrict cross batch true
           ^
SyntaxError: invalid syntax

What I am doing wrong?

(Also, when using GUI, the hbonds line was much longer, so I deleted those reveal, color, etc entities to make it more relevant to batch. (The "long" line

hbonds sel saveFile /Users/visvaldas/temp00.hbonds color #fffb00 dashes 5 restrict cross reveal true retainCurrent true

from the GUI does not work either)

Best wishes,

Visvaldas