On Jan 30, 2025, at 12:18 PM, Elaine Meng via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Sorry, to my knowledge there aren't currently any options for different coloring of the amino acid codes in the sequence alignment window.

Hi Anne-Frances,

We do have a ticket open for this capability (#15475 (Unable to synchronize structure colouring with sequence colouring)). I’ve added you to the recipient list for the ticket.

--Eric

Eric Pettersen

UCSF Computer Graphics Lab