In Chimera I can sort of print out a sequence alignment based on structural superposition.
(Match-align)
I can make a very nice structural superposition of very unrelated proteins with matchmaker, all I want to do is print out the resulting sequence alignment (where residues are with y A of each other)
Any help gratefully received.
With best wishes
Jim
Division of Structural Biology, Roosevelt Drive, Oxford, OX3 7BN