Hi Mishra, The easier way to install pandas into ChimeraX is to use the command “pip install pandas” in the ChimeraX command line. You can also install it via the Unix shell like you were trying to do, but you have to use the actual ChimeraX executable file, not the ChimeraX app folder which contains the executable and many other files/folder as well — so namely: /Users/nikhita/Desktop/ChimeraX-1.9.app/Contents/bin/ChimeraX -m pip install pandas —user --Eric
On Mar 17, 2025, at 5:56 AM, mishra.ananya.163--- via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear Eric,
Thank you for your help! We were able to run the aforementioned code successfully. However, we then made some changes to our code, which now involves he usage of the pandas module. However, we are having some difficulty trying to use pandas in Chimerax as we get the error "no module named pandas". We searched about this online and tried to download pandas for Chimerax via the terminal in Macbook but we got the error "permission denied".
Here is the error that we got: nikhita@nikhitas-laptop ~ % /Users/nikhita/Desktop/ChimeraX-1.9 -m pip install pandas zsh: permission denied: /Users/nikhita/Desktop/ChimeraX-1.9
Any help would be greatly appreciated! _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/