Dear Elaine, I would like to ask for your support again. I have a visual problem with this type of protein (see attached image). The coils in the red square should be b-sheets. I do not know why Chimera or ChimeraX show them as coils. Are there settings to change to show them correctly? Thank you Best regards A Il giorno mar 3 set 2024 alle ore 17:16 Elaine Meng <meng@cgl.ucsf.edu> ha scritto:
Hi Alessio, I don't know. It depends what format(s) the trajectory is in. Or, if Desmond does not write a format that Chimera or ChimeraX understands, maybe you can convert it with some other program.
Here are the trajectory formats ChimeraX can read <https://rbvi.ucsf.edu/chimerax/docs/user/commands/open.html#trajectory>
Here are the trajectory formats Chimera can read < https://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/movie/framemovie....
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 3, 2024, at 1:36 AM, Alessio Nocentini via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Dear Elaine,
is it possible to display a MD done with Desmond (Schrodinger) in Chimera or ChimeraX? If yes, how can I do?
Thank you
Best regards
A
-- Dr. Alessio Nocentini <https://cercachi.unifi.it/p-doc2-0-0-A-3f2b3c29372831.html> *Ricercatore Legge 240/10 a tempo determinato - Tipo B* *UNIVERSITÀ DEGLI STUDI DI FIRENZE* Dipartimento di Neuroscienze, Psicologia, Area del Farmaco e Salute del Bambino (NEUROFARBA) *ECCELLENZA 2023-2027* Via Ugo Schiff 6, 50019 - Sesto Fiorentino (Firenze), Italy Phone: +39-055-4573685