Hi Dr. Meng,

I have the independent components calculated already, sorry I did not make myself clear. I am wandering if I can use ChimeraX to display the ICA results I got from my own calculation.

Best,

Tianming

From: Elaine Meng <meng@cgl.ucsf.edu>
Date: Wednesday, February 8, 2023 at 11:33 AM
To: Tianming Qu <tqu@fsu.edu>
Cc: Tianming Qu via ChimeraX-users <chimerax-users@cgl.ucsf.edu>
Subject: Re: [chimerax-users] About plotting independent component analysis vectors

Hi Tianming,
I do not know which calculation you are talking about.  As far as I know, ChimeraX does not have any option to calculate independent components from an MD trajectory.
Best,
Elaine
-----
Elaine C. Meng, Ph.D.                      
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Feb 8, 2023, at 8:00 AM, Tianming Qu via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
>
> Dear all,
>
> Is there any way I can display the eigenvectors I got from the independent component analysis on ChimeraX, which is calculated from the protein MD trajectory.
> 
> Best,
> Tianming