Thanks for ChimeraX.

I've been loading multiple sequence alignments in fasta format directly into ChimeraX for mapping conservation onto a pdb and it works great. My MSA are directly from clustalo omega and in fasta format not clu formtat.

My question is this. My compiled al2co.c as well as the binary I downloaded for al21co.exe doesn't work with input in fasta format. And yet ChimeraX opens and al2co window when I input my alignment.

Does ChimeraX use another version of al2co that is configured to open fasta files?

thanks for any info.

ken murphy

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