I just subscribed so apologies if this has been asked before.
When is type the command: color zone #2 near #1/A distance 5
sharpEdges false farColor blue
I have the volume #2 in blue with chain A colored by atom type:
i.e. with carbons in sand, oxygens in red, nitrogens in blue.
I tried to follow the tutorial on youtube, downloading the model
and emdb like in the tutorial, and it does work like the
tutorial, meaning colored by chain.
I am wodering what is going on and how to fix it? I've seen this
behavior for my protein, on a PDB refined from Phenix, or from a
download from the rcsb.
I don't see anything special on the PDB, all the atoms are
listed normally.
Is it possible to assign a specific color per chain using this
command?