I don't think so, although they should be highly correlated if the model is well fit to the density. The Q-score as I understand it is more akin to a per-atom correlation of a map simulated from the atomic model with the experimental density map, whereas just sampling the local resolution at atom positions does not depend the model in the same way. Oli
On May 19, 2021, at 10:02 AM, Reza Khayat <rkhayat@ccny.cuny.edu> wrote:
Isn't this what Q-scores does?
https://www.nature.com/articles/s41592-020-0731-1 <https://www.nature.com/articles/s41592-020-0731-1>
Best wishes, Reza
Reza Khayat, PhD Associate Professor City College of New York Department of Chemistry and Biochemistry New York, NY 10031
From: ChimeraX-users <chimerax-users-bounces@cgl.ucsf.edu> on behalf of Oliver Clarke <olibclarke@gmail.com> Sent: Wednesday, May 19, 2021 9:58 AM To: Ioannis Skalidis Cc: chimerax-users@cgl.ucsf.edu Subject: [EXTERNAL] Re: [chimerax-users] Colour residues by local resolution estimation map
Hi Yiannis,
I am not sure whether this is possible in ChimeraX yet, but you can do this in Chimera using a combination of `Values at Atom Positions` and `Render by Attribute`.
https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/density/density.ht... <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.cgl.ucsf.edu_chimer...>
https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/render/render.html <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.cgl.ucsf.edu_chimer...>
Cheers Oli
On May 19, 2021, at 9:22 AM, Ioannis Skalidis <johnskalidis@gmail.com <mailto:johnskalidis@gmail.com>> wrote:
Dear all,
I am trying to color a protein model based on the local resolution of the corresponding map. I can color the overall surface of the model, but not the residues themselves. Is there a way to do this, e.g, color the model backbone somehow?
Thanks a lot for your help!
Cheers, Yiannis
--
Skalidis Ioannis, MSc Biochemistry & Cryo-EM Scientist PhD Candidate Kastritis Laboratory for Biomolecular Research Cryo-Electron Microscopy & Computational Structural Biology
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