Thanks to both of you for your help !
I have finally understood what was happening, the origin of my map was changed and it was a very long way from its old position given that the box was quite large. So basically, when if I was looking around for densities, I was only scrolling inside the solvent.
Thanks again,
Stephane Roche
On 17.06.21 10:07, Stéphane ROCHE via ChimeraX-users wrote:
Dear Mr/Mrs,
I am new to ChimeraX (v 0.7) and I have a trouble when saving a map.
I am working with a .ccp4 map from an electron microscopy project. I would like to slightly change the pixel size that was inaccurately estimated during data processing and chimeraX seems to be the program for doing that.
- Opening the map is fine.
- Then I change the pixel voxelsize which is also fine.
- I then save the modified map (I use the .mrc format here given that I do not find a .ccp4 format).
- However if I then use the map with my usual softwares (phenix, coot) it looks like pure noise. But the map looks normal with some other softwares (e.g. pymol). I also have no problem usually with my .mrc maps with any software so I would assume the problem is with the .mrc map I created
Do you know what I could do to solve this problem ?
Thanks,
Stephane Roche
Institut de Biologie Intégrative de la Cellule
91198 Gif sur Yvette
France