Looking at my older notes, I believe I did try their web server back in March 2023 when I first saw this paper, but the download was a Chimera session (not ChimeraX) at that time and their "contact us" webform didn't work. I don't know if they changed the server to really provide a ChimeraX session since then, or if it was a mistake in the paper. Elaine
On Dec 4, 2023, at 9:55 AM, Elaine Meng via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi Martin, According to this open-access paper, the ConSurf web server <https://consurf.tau.ac.il/> has been upgraded to provide ChimeraX sessions:
Using evolutionary data to make sense of macromolecules with a "face-lifted" ConSurf. Yariv B, Yariv E, Kessel A, Masrati G, Chorin AB, Martz E, Mayrose I, Pupko T, Ben-Tal N. Protein Sci. 2023 Mar;32(3):e4582. doi: 10.1002/pro.4582. PMID: 36718848 <https://onlinelibrary.wiley.com/doi/10.1002/pro.4582>
However, it appears that the ConSurf web server is down for maintenance right now, so I couldn't try it.
Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Dec 4, 2023, at 7:04 AM, martin.brehm--- via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear ChimeraX developers,
I have a question regarding a potential upgrade of ChimeraX. Would it be possible to include the functionality of ConSurf, a tool to plot the degree of sequence conservation onto a model, into ChimeraX? The code for this is publically available on GitHub: https://github.com/Rostlab/ConSurf See this publication for more information: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987940/ Thanks a lot in advance and have a nice day!
Best regards Martin Brehm
<image001.png>
Martin Brehm – PhD Student Falk Lab – Max Perutz Labs Vienna Room 1.624 – Phone +43 14277 74361 martin.brehm@univie.ac.at
_______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/