Sorry, I sent the help link from Chimera, not ChimeraX, but it is essentially the same: https://www.cgl.ucsf.edu/chimerax/docs/user/commands/volume.html#unroll -- Ricardo Diogo Righetto Em sáb., 27 de abr. de 2024 às 14:55, Ricardo Righetto < ricardorighetto@gmail.com> escreveu:
Hi,
We've been using the 'volume unroll' command on a cylindrical structure, and while we do get some very decent results with the defaults, we want to do a systematic comparison with values entered manually for the inner and outer radius.
Specifically, I'd like to know if I can get ChimeraX to report what minimum and maximum radii it is currently using for unrolling the volume?
Currently, all I get in the reply log is this: volume unroll #1 Opened unrolled SPA_density.mrc as #2, grid size 68,697,492, pixel 1.22,1.2,1.2, shown at step 1, values float32
https://www.cgl.ucsf.edu/chimera/data/downloads/1.8/docs/UsersGuide/midas/vo... From the help here it says:
(...) and inner and outer radii *r1* and *r2* (defaults are 90% of the smallest radius and 110% of the largest radius of the displayed isosurface, respectively, given the cylinder center and axis direction).
Since this is a high-resolution cryo-EM map with many intricate features, it's hard to visually find exactly what are the smallest and largest radii currently displayed at the isosurface. So we'd like to know what ChimeraX is finding by itself and compare it to our measurements.
Any tips are appreciated. Thank you!
-- Ricardo Diogo Righetto