Dear Elaine, I need your support, as I do not understand how to save a project .py file in chimeraX. I tried to follow the instructions, but did not find it. Thank you Best A Il giorno mar 23 lug 2024 alle ore 00:46 Elaine Meng <meng@cgl.ucsf.edu> ha scritto:
Hi Alessio, It is another option of the "cartoon" command, "suppressBackboneDisplay false", which you can shorten when you enter, for example:
cartoon suppress false
There are lots of options in each command that we don't want to explain one by one, so you should really take a look at the help pages:
<https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/cartoon.html>
Best, Elaine
On Jul 22, 2024, at 3:00 PM, Alessio Nocentini via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Ok thanks. It worked! Moreover, I would like to show both ribbon and backbone. In the old Chimera I was using "ribbackbone", but here it is not working. Can you help please?
Best
A
Il giorno lun 22 lug 2024 alle ore 23:15 Elaine Meng <meng@cgl.ucsf.edu> ha scritto: See < https://rbvi.ucsf.edu/chimerax/docs/user/commands/cartoon.html#style> for full explanation of each parameter, but here are some examples:
cartoon style helix width 1 thickness 0.5 cartoon style strand width 1 thickness 0.5 cartoon style arrowScale 3 cartoon style coil thickness 0.25
Also if you use the Presets menu to apply the cartoon styles it will show all the commands in the Log, so that is a way to see more examples.
Elaine
On Jul 22, 2024, at 1:13 PM, Alessio Nocentini via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Thank you. But I did not understand how to modify the width and thickness of the helix, sheet, coil and arrow sections. Can you help please?
Best
A
Il giorno lun 22 lug 2024 alle ore 17:59 Elaine Meng < meng@cgl.ucsf.edu> ha scritto: Hello Alessio, ChimeraX does not have a ribbon style editor tool. You can change the ribbon (cartoon) width, height, etc. with the "cartoon style" command, see:
<https://rbvi.ucsf.edu/chimerax/docs/user/commands/cartoon.html#style>
There are also a few different ribbon presets in the Presets menu.
<https://rbvi.ucsf.edu/chimerax/docs/user/menu.html#presets>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 22, 2024, at 6:38 AM, Alessio Nocentini via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Hello,
I have been an academic user of chimera for years. I have just downloaded chimerax but I cannot find the ribbon style editor. Can you please help?
Best regards
Alessio
-- Dr. Alessio Nocentini Ricercatore Legge 240/10 a tempo determinato - Tipo B UNIVERSITÀ DEGLI STUDI DI FIRENZE Dipartimento di Neuroscienze, Psicologia, Area del Farmaco e Salute del Bambino (NEUROFARBA) ECCELLENZA 2023-2027 Via Ugo Schiff 6, 50019 - Sesto Fiorentino (Firenze), Italy Phone: +39-055-4573685 _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
-- Dr. Alessio Nocentini Ricercatore Legge 240/10 a tempo determinato - Tipo B UNIVERSITÀ DEGLI STUDI DI FIRENZE Dipartimento di Neuroscienze, Psicologia, Area del Farmaco e Salute del Bambino (NEUROFARBA) ECCELLENZA 2023-2027 Via Ugo Schiff 6, 50019 - Sesto Fiorentino (Firenze), Italy Phone: +39-055-4573685 _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
-- Dr. Alessio Nocentini <https://cercachi.unifi.it/p-doc2-0-0-A-3f2b3c29372831.html> *Ricercatore Legge 240/10 a tempo determinato - Tipo B* *UNIVERSITÀ DEGLI STUDI DI FIRENZE* Dipartimento di Neuroscienze, Psicologia, Area del Farmaco e Salute del Bambino (NEUROFARBA) *ECCELLENZA 2023-2027* Via Ugo Schiff 6, 50019 - Sesto Fiorentino (Firenze), Italy Phone: +39-055-4573685