Dear ChimeraX Team,

I am currently working on visualizing interface residues using Circos plots via the Alphabridge web server, and I’m exploring ways to tailor the Boltz-2 ChimeraX output folder to serve as a compatible input format for Alphabridge web server (https://alpha-bridge.eu/) similar to the AF-3 output zipped folder.

Despite successfully generating Boltz-2  outputs in ChimeraX daily build, I’m facing challenges in aligning the output folder  with what Alphabridge web server expects for Circos plot generation. Could you kindly advise on:

Any advice on post-output  work flow steps would be immensely helpful, as I aim to produce publication-quality Circos plot visualizations of interface residue networks similar to those demonstrated by recent AlphaBridge pre-print publication (DOI: https://doi.org/10.1101/2024.10.23.619601).

Thank you very much for your support and for the fantastic tool you continue to develop for structural biology community. I look forward to your recommendations.

Best regards,

Arun

Arun Gupta PhD, MRSC