Hi Joe,

Neither Chimera nor ChimeraX can write IMOD model files. (Chimera can read those files but that is not available in ChimeraX yet.) So I don't know how you could get ChimeraX markers (which are written as an XML .cmm file) into an IMOD model.

Tom

On Jun 16, 2020, at 7:04 AM, Atherton, Joseph <joseph.atherton@kcl.ac.uk> wrote:
Hi,

I'd like to use the markers function in ChimeraX to make an IMOD 'model' for use in PEET for subtomogram averaging. ChimeraX's 'planes' function makes it a convenient program for doing this. Is such an export/conversion possible?

All the best,
Joe
Dr Joe Atherton
Lecturer in Cryo-electron Microscopy
Randall Centre for Cell and Molecular Biophysics
King's College London, UK
Email: joseph.atherton@kcl.ac.uk
Tel: (+44) 0207 836 5454
https://kclpure.kcl.ac.uk/portal/joseph.atherton.html
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