Eric's answer applies equally well to the case of a single PDB. Did you try what he suggested? Elaine
On Sep 6, 2023, at 12:41 AM, Enrico Martinez via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hello Eric,
actually it's about just a single model damped from the trajectory so the problem was to eliminate unusual bond from a single pdb
Enrico
Il giorno mar 5 set 2023 alle ore 20:36 Eric Pettersen <pett@cgl.ucsf.edu> ha scritto:
Hi Enrico, I'd say probably the simplest way is to use the disclosure triangle for that structure in the Model Panel to show its submodels, and then close the "missing structure" submodel.
--Eric
Eric Pettersen UCSF Computer Graphics Lab
On Sep 5, 2023, at 8:52 AM, Enrico Martinez via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear Chimera-X users !
I am performing visualisation of the protein-protein complex obtained from md trajectory. The issue is that the pbd lacks the TER record between two different chains so Chimera-X recognises it as a bound complex and consequently adds a long unusual bond (>30A) between C term of one unit and N term on the another. Are there any commands that could be useful to omit such an artifact (e.g. to hide all bounds
5 A etc) ? I found only a solution to hide several residues from the both units that will remove the long bond automatically.
Many thanks in advance
Enrico _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
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