However, after you run Autodock Vina (which could be directly, i.e. not using Chimera), you can view the docking results in Chimera with its ViewDock tool, or in ChimeraX with its ViewDockX tool: <https://rbvi.ucsf.edu/chimerax/docs/user/tools/viewdockx.html> Elaine
On May 30, 2024, at 9:10 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hello, ChimeraX does not have an Autodock Vina interface. For that, you have to use Chimera, although as it says in the gray box warning in the Chimera help page, it is not recommended for most research purposes:
<https://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/vina/vina.html>
Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On May 29, 2024, at 7:45 PM, Meden Isaac-Lam via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hello UCSF Chimera Team,
I used Chimera and AutoDock Vina about 2 years ago.
I just downloaded ChimeraX and I am trying to learn it. However, I forgot how to link AutoDock Vina. In the previous Chimera, it was under Tools and Surface Binding Analysis. Any suggestion on how to do it?
Thanks. Your assistance is greatly appreciated.
Sincerely, Meden F. Isaac-Lam Purdue University Northwest