For the rest of the list - Yanhe wanted to change the transparency from 0 to 80 over 50 frames. In ChimeraX, this can be accomplished with the perframe command:

perframe "transparency #2 $1" range 0,80 frames 50

https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/perframe.html

Cheers
Oli

On Jun 26, 2024, at 2:55 PM, Oliver Clarke <olibclarke@gmail.com> wrote:

https://www.cgl.ucsf.edu/chimerax/docs/user/commands/transparency.html

On Jun 26, 2024, at 2:39 PM, Yanhe Zhao via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Dear ChimeraX team,

I have a map with model docking and am making movie. My plan is to fade away the map to show the docked model for next step. I tried the crossfade which works.
But I want to use the transparency command for this purpose because I want to keep the map at specific transparency level, like 80%. 
The chimera has command like 'surftransparency 80 #1 50'. I was wondering what is the similar command in ChimeraX?

Thanks and cheers,
Yanhe
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