I upgraded to the latest release ChimeraX (and Isolde) and this only happens when the CIF is then opened in old Chimera. In X it's fine.

Best,
-da

On Wed, Apr 22, 2020 at 11:04 PM Daniel Asarnow <asarnow@msg.ucsf.edu> wrote:
It's 0.92 nightly from March 8th, I'm running the ISOLDE beta from that time. I'll update to the 0.93 release and see what happens.

Also, I'm running Windows.

Thanks!

-da

On Wed, Apr 22, 2020 at 10:56 PM Tristan Croll <tic20@cam.ac.uk> wrote:
Is your ChimeraX version up to date? That used to be an issue, but I haven’t seen it for quite a while now.






> On 23 Apr 2020, at 06:51, Daniel Asarnow <asarnow@msg.ucsf.edu> wrote:
>
> Hi all,
> When I save a CIF from ChimeraX, the missing segment pseudobonds are replaced by real (super unphysical) bonds. Can I do something about it, or is this a bug?
>
> Thanks and best,
> -da
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