Thank you for this information, Elaine! Would you plan to integrate the MD engine in chimera-X in the same way as it was in Chimera ? Yours with thanks, Enrico Il giorno dom 29 set 2024 alle ore 21:57 Elaine Meng <meng@cgl.ucsf.edu> ha scritto:
There is no "motion blur" special effect, if that is what you meant.
You could try manually making a different conformation manually (e.g. by rotating a bunch of bonds by hand) as and then morphing from the modified model to the original model with "morph" command, but that may not be anything like what you want.
<https://rbvi.ucsf.edu/chimerax/docs/user/commands/morph.html>
Alternatively you could try using the "tug" command, but it won't work on structures containing nonstandard residues (most ligands) unless you also install a separate plugin bundle from the toolshed as described in the help links. I have not tried that.
<https://rbvi.ucsf.edu/chimerax/docs/user/commands/tug.html> <https://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html#openmm> <https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxtugligands>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 29, 2024, at 8:41 AM, Enrico Martinez via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Dear ChimeraX users!
I noticed that in ChimeraX there is no built-in molecular dynamics simulation engine as opposed to the older UCSF Chimera. Is it possible to use some visualization trick to deform slightly static coordinates of atomic selection introducing (visually) the impression that they move during movie recording ?
Many thanks in advance
Enrico