Dear Dr. Elaine, Greetings! I hope this message finds you well. I would like to inquire if ChimeraX offers options for fixing PDB files, specifically for correcting hydrogen bonds and performing energy minimization, in preparation for docking studies. I look forward to hearing from you and appreciate your guidance. Best regards,Ahmed Morsy =========================Ahmed Morsy, Ph.D. Department of Stem Cell & Regenerative Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul05029, Korea C.P.: +82/10-5299-5844 E-mail: ahmed_morsy86@yahoo.com; ahmed@konkuk.ac.kr Orcidid: https://orcid.org/0000-0003-3873-9903 Scopus id: 55258308400 (https://www.scopus.com/authid/detail.uri?authorId=55258308400) Researchgate: https://www.researchgate.net/profile/Ahmed-Abdal-Dayem GoogleScholar: https://scholar.google.co.kr/citations?user=NevFBgMAAAAJ&hl=en On Friday, August 9, 2024 at 04:13:02 PM GMT+9, ahmed morsy <ahmed_morsy86@yahoo.com> wrote: Dear Dr. Elaine Meng, Thank you very much for the prompt response and solving the issue.I assure you that the sites are operating well. Have a nice day! Best regards,Ahmed =========================Ahmed Morsy, Ph.D. Department of Stem Cell & Regenerative Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul05029, Korea C.P.: +82/10-5299-5844 E-mail: ahmed_morsy86@yahoo.com; ahmed@konkuk.ac.kr Orcidid: https://orcid.org/0000-0003-3873-9903 Scopus id: 55258308400 (https://www.scopus.com/authid/detail.uri?authorId=55258308400) Researchgate: https://www.researchgate.net/profile/Ahmed-Abdal-Dayem GoogleScholar: https://scholar.google.co.kr/citations?user=NevFBgMAAAAJ&hl=en On Thursday, August 8, 2024 at 04:30:23 AM GMT+9, Elaine Meng <meng@cgl.ucsf.edu> wrote: Dear Dr. Ahmed Morsy, The website and those links are working now. Please try again -- sorry for the inconvenience. Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 7, 2024, at 3:41 AM, ahmed morsy <ahmed_morsy86@yahoo.com> wrote:
Dear Dr. Elaine Yang,
I hope this message finds you well.
I am reaching out to seek your assistance regarding some issues I am facing with accessing certain resources. Specifically, the following links are not working: Protein-Ligand Binding Sites Tutorial: https://www.rbvi.ucsf.edu/chimerax/docs/user/tutorials/binding-sites.html ViewDockX Tool: https://www.rbvi.ucsf.edu/chimerax/docs/user/tools/viewdockx.html.
Additionally, I am unable to access any content from the ChimeraX tutorials. These resources are crucial for my current research, and I would greatly appreciate any help or guidance you can provide to resolve these issues.
Thank you very much for your time and assistance.
Best regards, Ahmed Morsy =========================
Ahmed Morsy, Ph.D. Assistant Professor, Department of Stem Cell & Regenerative Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Korea Tel.: 02-450-0498 C.P.: +82/10-5299-5844 E-mail: ahmed_morsy86@yahoo.com; ahmed@konkuk.ac.kr Orcid id: https://orcid.org/0000-0003-3873-9903 Scopus id: 55258308400 (https://www.scopus.com/authid/detail.uri?authorId=55258308400) Researchgate: https://www.researchgate.net/profile/Ahmed-Abdal-Dayem GoogleScholar: https://scholar.google.co.kr/citations?user=NevFBgMAAAAJ&hl=en