update: it seems that I could fix it via adding the transparency option directly to color: color byattribute kdh sel target s palette sandybrown:coral:orangered novalue gray transparency 55 Just one extra question: how could I keep the coulombic electrostatic surface (calculated using the command coulombic) in the same manner for all frames ? Il giorno mar 30 gen 2024 alle ore 12:28 Enrico Martinez <jmsstarlight@gmail.com> ha scritto:
Dear ChimeraX users!
I am working on visualization of protein-ligand complex from MD trajectory loaded as multiframe pdb via open coordset true
Here is my script:
#coloring ligand options color ligand & C gold style ligand sphere
#transparency surface protein color byattribute kdh protein target rs palette sandybrown:coral:orangered novalue gray transparency protein 5 surfaces select zone ligand 4 protein transparency sel 55 surface
The problem is only in the transparency which could be set only on the first frame but then disappears when I browse movie. How could I modify my scipr to keep the transparency on all frames ?
Many thanks in advance !
Enrico