Currently, I think the shell is your friend here. First, select the two sulfurs. Then, in the shell: from chimerax.atomic import selected_atoms sel=selected_atoms(session) m = sel.unique_structures[0] m.new_bond(*sel) - Tristan
On 7 Apr 2020, at 12:24, Mutum YAikhombA <mutum.yaikhomba@mrc-mbu.cam.ac.uk> wrote:
Hi
I was trying to make new disulphide bonds between a pair of cysteine residues (say residue numbers 142 and 157) using ChimeraX. The standard Chimera command - 'bond' doesn’t work in ChimeraX. I have gone through the structure editing tool and couldn’t find an equivalent tool. I found some command-line tools in this page (new-bond), but this seems to be not so straightforward to use - https://www.rbvi.ucsf.edu/chimerax/docs/devel/bundles/atomic/src/atomic.html....
Could you please help? Thanks Yaikhomba _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: http://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users