Hi Elaine,

I am writing up some results. Would you please see if I am describing our method correctly?

Our protein has 2 domains, one whose structure is well known and for which many PDBs are available, and another that is novel.

The PDB IDs below came from your file entitled af512_template_domain_names.json

"Protein structure was predicted with AlphaFold2 (Jumper et al., 2021) as implemented by UCSF ChimeraX v. 1.6rc (Pettersen et al., 2021) with the option to use PDB templates. In practice, this meant that the N-terminal DUF3494 domain of the protein was predicted based on several existing PDB structures (7bwy_A, 7bwx_A, 3uyu_A, 6a8k_A, 3wp9_A, 4nu3_A, 4nu3_B, 6bg8_B, 4nu2_A, 3vn3_A, 6eio_A, 4nuh_A, 7dc5_B, 5uyt_A, 5uyt_B, 5uyt_A, 5uyt_B) and the C-terminal domain was predicted de novo by AlphaFold."

Is it OK?

thank you

Jim