Hi Oli, Ok, I added the shortcut "ri" to ChimeraX that selects all the residues in a chain between two already selected residues. In ChimeraX you can enable keyboard shortcuts with the command "ks". Then there are various two letter keyboard shortcuts you can type when you have clicked on the graphics pane instead of typing commands. The shortcut "cl" gets you back to typing normal commands. The shortcut "Ls" lists the shortcuts. You can also just run a shortcut as a command like "ks ri" which won't switch you into shortcut mode. The two-letter shortcuts are an undocumented feature. I think we decided many years ago not to develop it in ChimeraX since it was used by so few people in the old Chimera. You could define the selbetween command to run the residue interval shortcut alias selbetween ks ri We should add an official command (e.g. "select between"?) for this. I wanted to see what other ChimeraX developers thought about that before adding such a command. Tom Here are the shortcuts listed using command "ks Ls". I added this Ls shortcut and the ri shortcut to the August 23, 2023 daily build. Keyboard Shortcuts Open, Save, Close Ca Close all models dm Display selected models Ds Delete selected models hm Hide selected models Qt Quit Map Display as Skin preset aw Airways CT scan coloring bc Brain CT scan coloring bx Show box faces ch Chest CT scan coloring ct Adjust contour level mouse mode cz Color map to match atoms dc Default volume curve fl Show map or surface in filled style fm Fit in map fr Show map at full resolution fs Fit molecule in map subtracting other molecules ft Fit molecule in map fT Fit map in map gf Smooth map gs Show map as grayscale hd Hide dust hM Hide map is Show slab mc Mark map surface center mC Mark center mouse mode me Show map or surface as mesh mk Place marker mouse mode mP Move planes mouse mode MS Map series mouse mode o3 Show 3 orthogonal planes ob Toggle outline box pa Show all planes pl Show one plane ps Volume perpendicular slices s1 Show map at step 1 s2 Show map at step 2 s4 Show map at step 4 sb Subtract map from map sd Show surface as dots sf Show map or surface in filled style sM Show map sm Show surface as mesh vz Show map near atoms zs Volume xyz slices Surfaces ds Display surface hs Hide surface t0 Make surface opaque t5 Make surface transparent tt Toggle surface transparency Molecule Display bf Color by bfactor bs Display atoms in ball and stick cc Color chains ce Color non-carbon atoms by element cp Color polymers da Show atoms ep Color surface by electrostatic potential ha Hide atoms hB Hide bonds hb Show hydrogen bonds HB Hide all hydrogen bonds Hb Half bond coloring hp Show hydrophobicity surface hr Undisplay ribbon hw Hide water atoms if Chain interfaces diagram ms Show molecular surface rb Display ribbon rB Rainbow color N to C-terminus rc Random color atoms and residues ri Select residue interval sa Compute solvent accesible surface area sB Display bonds Sb Single color bonds sp Display atoms in sphere style sq Show polymer sequence st Display atoms in stick style sw Show water atoms xm Minimize link lengths General Controls bk Black background bl Toggle motion blur cl Enter command cs Clear selection dq Toggle depth cue dv Default orientation gb Gray background la Ambient lighting lf Full lighting lF Flat lighting ls Simple lighting Ls List keyboard shortcuts mS Move selected mouse mode mv Movement mouse mode nf Toggle space navigator fly mode nt Show scene triangle count oc Start Oculus Rift stereo rt Show framerate se Toggle silhouette edges sh Toggle shadows sn Toggle use of space navigator sx Save snapshot va View all vd Record spin movie vs View selected wb White background zm Zoom mouse mode
On Aug 23, 2023, at 8:24 AM, Oliver Clarke via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi,
In Chimera, the accelerator “ri” selects intervening residues. This is convenient because one can select two residues (let’s say at the start and end of a domain) and then select all the residues between them without having to explicitly specify a residue range (I have this bound to the alias “selbetween”) in Chimera.
Is there any equivalent accelerator in ChimeraX?
Cheers OIi _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/