Hi Tom,

thank you for your prompt and kind reply.
It would be amazing! My idea is to have each plane of the map in a separate TIFF file (ie 400 plane, 400 images). I didn’t know about the pixel size, but I will use ImageJ, so it seems to be perfect.
Thank you for your help and efforts.
Have a great day,

Andrea

Il giorno mar 15 dic 2020 alle 18:11 Tom Goddard <goddard@sonic.net> ha scritto:
Hi Andrea,

  ChimeraX does not have a command to write map data in TIFF format.  But I could add that ability today.  Do you want each  plane of a map written to a separate TIFF file, or all planes written to one file, or do you just want to show one specific plane and write it out as TIFF?  You know the TIFF format doesn't have the pixel size for your map unless it is written in using some specific extra info for example using an ImageJ TIFF header or OME TIFF header.  What software do you intend to use these TIFF images in?

        Tom


> On Dec 15, 2020, at 4:19 AM, Andrea Dallapè <andrea.dallape@unitn.it> wrote:
>
> Hi all,
>
> I really hope that you all are healthy and safe.
> I would like to ask you if there is a method/command script to extract TIFF images from a density map. Basically, I used the "plane" option in Volume Viewer to see all the planes contained in the map.
> Now I would like to extract all the planes in TIFF images. Is this possible? Could you suggest to me how to deal with it?
> Thank you for your kind attention.
> Have a great day,
>
> Andrea
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