Hi Fabian, Oops, I changed the location of the tutorial and forgot to update the open command inside the tutorial. I just fixed it, so thanks for letting me know! The command should instead be: open https://www.rbvi.ucsf.edu/chimerax/data/conservation-coloring/conservation-c... (because that's where the tutorial is, <https://www.rbvi.ucsf.edu/chimerax/data/conservation-coloring/conservation-c...>) In example 1, I used the Consurf sequence alignment to calculate values in ChimeraX (because the Consurf server is one good way to get alignments), but I agree it would also be useful to show the Consurf values directly. Thanks, Elaine
On Dec 29, 2020, at 1:16 AM, Fabian Glaser <fabian.glaser@gmail.com> wrote:
Dear Elaine,
This is gorgeous, thanks a lot! ConSurf grades are easy to use here and easy to present.
I love chimeraX is really.a big big improvement.
The only thing is I tried to open https…. But it does not work for me, I can do the tutorial downloading the file, but not with open http.. command.
Best,
Fabian
Fabian Glaser PhD
Bioinformatics Knowledge Unit - BKU The Lorry I. Lokey Center for Life Sciences and Engineering Technion - Israel Institute of Technology, Haifa, Israel Web https://lokey.technion.ac.il/bioinformatic-knowledge-unit/ Tel +972 (0) 4 8293701
On 25 Dec 2020, at 0:12, Elaine Meng <meng@cgl.ucsf.edu> wrote:
In case anyone is interested, there's a new tutorial on coloring by sequence conservation using ChimeraX (requires version 1.1 or newer). It has click-to-execute links if you view it in the ChimeraX built-in browser.
<https://www.rbvi.ucsf.edu/chimerax/data/conservation-coloring/conservation-c...>
Happy holidays! Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
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