I know it’s not a chimerax answer but, we have functionality for doing this in ProDy if you want to try that. Best wishes James Quoting HONG ZHAN via ChimeraX-users <chimerax-users@cgl.ucsf.edu>:
Dear all,
I am trying to align molecules based on Dali server output. However, I can’t download the superposition results from the Dali server webpage (or anyone know?), but I can generate an alignment file with 2D structural alignment from the Dali server. Is there a way to use matchmaker to superpose molecules based on output alignment from Dali server? How to run structure conservation calculation to color the molecule? If I just give Dali’s alignment file, it still calculate conservation based on sequence not structure.
Best, Hong
_______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users