On Jan 30, 2025, at 16:51, Eric Pettersen <pett@cgl.ucsf.edu> wrote:On Jan 30, 2025, at 12:18 PM, Elaine Meng via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:Sorry, to my knowledge there aren't currently any options for different coloring of the amino acid codes in the sequence alignment window.Hi Anne-Frances,We do have a ticket open for this capability (#15475 (Unable to synchronize structure colouring with sequence colouring)). I’ve added you to the recipient list for the ticket.--EricEric PettersenUCSF Computer Graphics Lab