Hi,

I tried to run Alphafold prediction by ChieraX, and it appears below Error.

Please cite ColabFold: Making protein folding accessible to all. Nature Methods (2022) if you use these predictions.
INFO:__main__:Starting prediction on 2023-12-26 UTC time
INFO:__main__:Installing ColabFold on Google Colab virtual machine.
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
<ipython-input-8-1833a07b73e1> in <cell line: 329>()
    327 remove_from_list(seq_list, 'prokaryote')  # Obsolete "prokaryote" flag
    328
--> 329 run_prediction(seq_list, use_templates = use_templates, energy_minimize = not dont_minimize)

7 frames
/usr/local/lib/python3.10/dist-packages/alphafold/data/mmcif_parsing.py in <module>
     22 from absl import logging
     23 from Bio import PDB
---> 24 from Bio.Data import SCOPData
     25
     26 # Type aliases:

ImportError: cannot import name 'SCOPData' from 'Bio.Data' (/usr/local/lib/python3.10/dist-packages/Bio/Data/__init__.py)

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Would you like to help me with it?

Thank you.

Sincerely,

PH
Ping-Hung Chen, Ph.D., Assistant Professor
Institute of Biochemistry and Molecular Biology
College of Medicine, National Taiwan University
Address: R913, No.1, Sec.1, Ren-Ai Rd., Zhongzheng Dist., Taipei 10051, Taiwan (R.O.C.)
E-mail: pinghungchen@ntu.edu.tw;
            phcrose@gmail.com
Phone: +886 2-23123456 Ext. 88864

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