Dear Elaine,

I would like to ask for your support again. I have a visual problem with this type of protein (see attached image). The coils in the red square should be b-sheets. I do not know why Chimera or ChimeraX show them as coils. Are there settings to change to show them correctly?

Thank you

Best regards

A

Il giorno mar 3 set 2024 alle ore 17:16 Elaine Meng <meng@cgl.ucsf.edu> ha scritto:

Hi Alessio,
I don't know.  It depends what format(s) the trajectory is in.  Or, if Desmond does not write a format that Chimera or ChimeraX understands, maybe you can convert it with some other program.

Here are the trajectory formats ChimeraX can read
<https://rbvi.ucsf.edu/chimerax/docs/user/commands/open.html#trajectory>

Here are the trajectory formats Chimera can read
<https://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/movie/framemovie.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Resource for Biocomputing, Visualization, and Informatics
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Sep 3, 2024, at 1:36 AM, Alessio Nocentini via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
>
> Dear Elaine,
>
> is it possible to display a MD done with Desmond (Schrodinger) in Chimera or ChimeraX?
> If yes, how can I do?
>
> Thank you
>
> Best regards
>
> A

--

Dr. Alessio Nocentini

Ricercatore Legge 240/10 a tempo determinato - Tipo B

UNIVERSITÀ DEGLI STUDI DI FIRENZE

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