Hi Francisco, I don't really understand the question. As I understand it, in ChimeraX all maps are treated the same. A difference map is still a map, and there is no way to mark it as a "difference" map... and even if there were some way to do so, it wouldn't change how the map is handled or displayed. But maybe this question is in reference to ISOLDE? In that case, I will have to plead ignorance and let somebody else respond. Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 22, 2023, at 2:00 PM, Francisco Murphy Pérez via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
When I open a map* in chimerax, how do I specify it is a difference density map?
* maps are generated with `phenix.mtz2map finalpdb.pdb finalmtz.mtz` ... both files from the pdb-redo.
Thanks