[chimerax-users] Re: [ISOLDE] Handling Lys-Asp iso-peptide bonds and D-amino acids

Hi Tristan and Eric, Having put up fires that needed putting out and I finally had time to pick this up again. I'm happy to report that instructions worked as written! The combination of gaff-type .mol2 files and empty .frcmod files was sufficient for the FFXML file conversion. And the isopeptide bond geometry looks correct in simulation. Cheers for the help, both! Ta, Yang