Hi Elaine, Thanks a lot for the reply. I was aware of the filtering, but constraining the search would be more efficient. If this could be implemented in a future release of ChimeraX, I believe it would be useful for many :) Thanks a lot and best wishes, Matthias Sent from Outlook for Android<https://aka.ms/AAb9ysg> ________________________________ From: Elaine Meng <meng@cgl.ucsf.edu> Sent: Tuesday, January 28, 2025 5:47:48 PM To: Vorländer,Matthias Kopano <matthias.vorlaender@imp.ac.at> Cc: ChimeraX-users@cgl.ucsf.edu <chimerax-users@cgl.ucsf.edu> Subject: Re: [chimerax-users] Limit blast search to species Hi Matthias, There is no option to restrict the search itself. However, when you get the results back, you can show the "Species" column and (optionally) sort the results by that. See screenshot attached. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco [cid:e31f632a-0abd-490c-8114-88dd104aaea7@eurprd06.prod.outlook.com]
On Jan 27, 2025, at 11:12 PM, Vorländer,Matthias Kopano via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear ChimeraX team, I wondered if it is possible to limit a BLAST search to only a single species when querying a selected database. This would facilitate identifying homologs in your favorite model organism, rather than picking up the most closely related homolog overall (i.e when using the alphafold database). Many thanks, Matthias
