Hi Daniel,

The pLDDT scores are saved in the B-factor column in the PDB files returned by AlphaFold. If you open them, you should be able to do "color bfactor palette alphafold range 0,100".

Best,

Tristan

From: ChimeraX-users <chimerax-users-bounces@cgl.ucsf.edu> on behalf of Daniel Trejo Banos via ChimeraX-users <chimerax-users@cgl.ucsf.edu>
Sent: 10 February 2022 10:46
To: chimerax-users@cgl.ucsf.edu <chimerax-users@cgl.ucsf.edu>
Subject: [chimerax-users] Loading AlphaFold output

Hello everyone,

I have the results from some AlphaFold runs, is there a way to open them with ChimeraX, so I can see the plDDT, without needing to run Alphafold from within ChimeraX?

Thank you and best regards