Hi,
Foldseek ran successfully with PDB but crashed in an independent comparison to AlphaFold DB (see attached).
Looks like a problem with alphafold file name?
Thanks for your help.
Best,
david
David M. Miller, III, PhD
Professor
Cell and Developmental Biology
465 21st Avenue South
PMB 407935
3120 MRB III
Vanderbilt University
Nashville, TN 37240-7935
(615) 343-3447
https://medschool.vanderbilt.edu/miller-lab/