Hello Elaine,

I have a question, in chain A and chain B, I have identified the contact resides using the command ‘alphafold contacts /A to /B distance 3’. I want to write the chain A and B (for example /A Asn 431 — /B The 321) contact residues as file. How can also get the information on the blue and yellow interactions as well. I used the information you have provided in previous email, I can write only either chain but not the contact residue information that will help in protein-protein interactions. The example is provided in the below screen shot.

Thank you.

Amita

On Apr 2, 2024, at 4:30 PM, Elaine Meng <meng@cgl.ucsf.edu> wrote:

info residues sel saveFile ~/Desktop/residue-list
Screenshot 2024-04-16 at 12.15.45 PM.png