I tried using 0.1 but that doesn’t give me the outline for the region in front that I wanto highlight so I am using depth cue of 0.05

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From: Elaine Meng <meng@cgl.ucsf.edu>
Sent: Sunday, August 4, 2024 11:54:41 AM
To: Shubhangi Agarwal <sha4008@med.cornell.edu>
Cc: chimerax-users@cgl.ucsf.edu <chimerax-users@cgl.ucsf.edu>
Subject: [EXTERNAL] Re: [chimerax-users] Silhoutte
 
Hi Shubhangi, I don't know why your silhouettes are generating so many extra lines, but there is a parameter you can adjust, "depthJump", e. g. command: graphics silhouettes true depthJump 0. 1 If you just use command: graphics silhouettes .. . it
Hi Shubhangi,
I don't know why your silhouettes are generating so many extra lines, but there is a parameter you can adjust, "depthJump", e.g. command:

graphics silhouettes true depthJump 0.1

If you just use command:

graphics silhouettes

...it will say in the Log what settings you have currently.  See help for this command:
<https://urldefense.com/v3/__https://rbvi.ucsf.edu/chimerax/docs/user/commands/graphics.html*silhouettes__;Iw!!Aer6R9v1Nk4!4q8UT5QJIy3-NJSFL1XUAQZGrSCXhwVgvpKBewr5CGj1mcKioxTPsRbfIDqnEJ1-nwYdAal-ygf-0BIG6bc-0U6r$>

However, since your display was also showing lots of little dots, maybe there is some other problem such as with your graphics driver.

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Resource for Biocomputing, Visualization, and Informatics
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Aug 3, 2024, at 6:46 AM, Shubhangi Agarwal via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
> 
> Dear developers,
> 
> I am trying to outline surfacerepresentation of my protein structure with the silhouette feature but it gives me black dashes along rest of the surface which I don’t want, how can I just use the black borderline feature for my surface and protein?
> Figure attached below.
> 
> Thank you
> 
> Shubhangi
>