Hello Tom and Elaine,

Thank you for the answers. I realized now that the order of actions matters in this case:

1. fit map #2 into #1

2. resample map #2 onGrid #1 produces new map #3

3. save aligned-map.mrc model #3

4 reopen #3 and that map retains the newly assigned coordinates.

Thank You very much.

Issue is solved.

Best regards,

Nebojša Bogdanović, Ph.D

Department of Physiology and Biophysics,

School of Medicine,

Case Western Reserve University

On Mon, Oct 10, 2022 at 5:07 PM Tom Goddard <goddard@sonic.net> wrote:

Use commands

volume resample #2 onGrid #1
save aligned_map.mrc model #3

Tom

> On Oct 10, 2022, at 1:49 PM, Nebojsa Bogdanovic via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
>
> Hello,
>
> I open two maps and I fit #2 into #1. I need to save map #2 at it's new position, but there is no option "relative to model or map". By doing "volume resample #1 onGrid #1, I match the box sizes but the new position is not maintained after saving that new map. Is there any command/function I could do that with?
>
> Thank You and regards,
> Nebojša Bogdanović, Ph.D
> Department of Physiology and Biophysics,
> School of Medicine,
> Case Western Reserve University
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