Sorry, that was only one of the problems. As you can see from the log, when you open your file in ChimeraX, there are many bad PDB records. See https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/tutorials/framepdbintro.ht... for details about the format, or the full PDB format documentation at https://www.wwpdb.org/documentation/file-format. There are also lots of duplicate atom serial numbers that confuse things. -- Greg On 10/4/22 13:52, Greg Couch via ChimeraX-users wrote:
The coordinates are in the wrong columns for your HETATM residues. Remove the spaces after HETATM.
-- Greg
On 10/4/22 13:19, Dr. Eddie via ChimeraX-users wrote:
Hi all, I've got a pdb and I can't seem to get ChimeraX to recognize the ligand (resname STR) at the end of the pdb. I've modified the ATOM to be HETATM but it still does not show up. I hide solvent and the lipids and I know where it should be (from seeing it in vmd) but only a void is there. Any ideas what is wrong with the pdb? Thanks, Eddie
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