The UCSF ChimeraX team has not looked at using ChimeraX as an AI agent or at Model Context Protocol (MCP). Your links to github repositories that have tried to hook up AI agents to ChimeraX with MCP were a surprise to me. It would be cool to see a video using an AI agent with ChimeraX.

On Oct 15, 2025, at 6:29 PM, Alexis Rohou via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hi all,

I would like to use ChimeraX via an agent. Quick googling suggests I'm not the first person to think of this (here, here), but before I dive in I thought I'd check - anyone else actively working on this? Or maybe you have worked on it and hit a roadblock?

Cheers,
Alexis
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