Also not sure because I haven’t used PyMOL in years, but maybe the crossfade command does what you want? I like using it for smooth transition between graphics settings in movies.

Guillaume


On 19 Oct 2023, at 18:47, Elaine Meng via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

On Oct 19, 2023, at 4:21 AM, Carl Johan Hagstromer <carl.johan.hagstromer@ki.se> wrote:

Would love fading options, like in PyMOL


Hi Carl,
We aren't Pymol users so we don't know exactly what you are referring to, but it may well be possible in ChimeraX if you could give more detail. We can put this discussion on chimerax-users@cgl.ucsf.edu (CC'd here) so that more folks can weigh in.

ChimeraX can do: depth cueing (fading front->back), gradual fading in/out of structures and/or 2D labels by increasing or decreasing transparency over a number of image frames, and/or color modification (e.g. increasing whiteness of all current colors).

Best,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco






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