Hi David, Did you try asking the Consurf developers? There is a "contact us" link on their website: <https://consurf.tau.ac.il/consurf_contact.php> I haven't used this web service recently. I have only used its outputs in Chimera so far (never ChimeraX). If I go to a page for precalculated results there is a "Chimera" download that gives a Chimera session (.py file), e.g. <https://consurfdb.tau.ac.il/main_output.php?pdb_ID=2GBP&view_chain=A&unique_...> I tried downloading that just now, and it works in Chimera. In Chimera you can use File... Export Scene... and export a .py file that you can open with ChimeraX. Only the ribbon and carbon atoms are colored by the Consurf values, however, not the heteroatoms. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 24, 2024, at 8:08 PM, David S. Fay via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi,
I’m curious if anyone else is having trouble getting results from ConSurf? The site appears to be up, which maybe wasn’t the case a while back. But trying various kinds of inputs doesn’t lead to any results. Rather, it just seems to just get hung up. (It’s also possible I’m doing something incorrectly.)
Thanks in advance!
David