To close molecular surfaces

surface close #1

or just

surf close

If instead you do

~surface

that hides the surface.  I discourage use of these obscure "~" commands that Chimera used.  Use "surface hide #1" or "surface close #1".

If you just hide the surfaces they are still in the session file.  You can also see the surface models in Model Panel by clicking the little triangle and the left of the model name to show submodel of your molecule.  And you can choose those surface models and close them.

Tom


On Jul 7, 2020, at 2:48 PM, Melissa Jurica <mjurica@ucsc.edu> wrote:

That was my first guess, so I turned off the surface view.  However, no change in file size. I don’t see how to delete the surface that I calculated- still trying to get the hang of ChimeraX after switching from Chimera.


^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Melissa S. Jurica, Ph.D.
Professor, Molecular, Cell & Developmental Biology
Center for Molecular Biology of RNA
University of California, Santa Cruz
1156 High Street
Santa Cruz, CA 95064

Office: 450 Sinsheimer Labs Lab: 434 Sinsheimer Labs 
Office phone (831) 459-4427 Lab phone (831) 459-2463 Fax (831) 459-3139
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

On Jul 7, 2020, at 2:41 PM, Tom Goddard <goddard@sonic.net> wrote:

Hi Melissa,

Molecular surfaces make session files very large because they save all the surface triangles.  Did you have a molecular surface in that large session?  I have considered not saving the molecular surfaces and just recomputing them although that will make restoring the session slower as it tries to recompute the surface.

Tom


On Jul 7, 2020, at 2:28 PM, Melissa Jurica <mjurica@ucsc.edu> wrote:

What deterimines the file size of saved ChimeraX sessions (.csx files)?  I saved a session of one structure (6Y5q) at 4 MB, and another structure  (6y50) at 2.6 MB.  However, when I saved a session with both structures open, it was a whopping 120.6 MB.  Is there a way to reduce that file size?

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Melissa S. Jurica, Ph.D.
Professor, Molecular, Cell & Developmental Biology
Center for Molecular Biology of RNA
University of California, Santa Cruz
1156 High Street
Santa Cruz, CA 95064

Office: 450 Sinsheimer Labs Lab: 434 Sinsheimer Labs 
Office phone (831) 459-4427 Lab phone (831) 459-2463 Fax (831) 459-3139
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

_______________________________________________
ChimeraX-users mailing list
ChimeraX-users@cgl.ucsf.edu
Manage subscription:
https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users