Hi!
I have a large system containing >100k atoms w/o water. Amber produced a pdb file, and I have a trajectory file for it. When I try to open the pdb in chimeraX, most of it loads but with warning "Ignoted bad PDB record on line xxx" and it's all for atom # >
9,999. As a result, when I try to open the .nc file along with the pdb file, the # of atoms don't match anymore.
Alex Lee
PhD Student
Department of Biochemistry & Molecular Biology
Complex Carbohydrate Research Center
University of Georgia
315 Riverbend Rd.
Athens, GA 30602
Email: ahl63010@uga.edu
Mobile: (470) 641-3884