open 7zvw

open 14989 from emdb

open 14980 from emdb

volume level 0.6

volume morph #2,3 scale 1,0.6

color zone #4 near #1 distance 10

movie record ; volume morph #2,3 model #4 scale 1,0.6 ; wait 25 ; movie encode ~/Desktop/morph.mp4

The maps have different intensity scales so I scaled the second one down by a factor of 0.6.

  If you want to morph your atomic structure at the same time from the start to end states and color zone using the morphing atomic structure then it is a bit trickier and you would use the ChimeraX perframe command to run colorzone at each frame to use the changing atom positions.

Tom

On Aug 11, 2023, at 8:35 AM, Chen, Shin-Fu via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hello,

I hope this message finds you well. I am currently working on creating a movie using the "volume morph" command based on ten sets of mrc files. I have encountered an issue that I would appreciate your assistance with. Prior to applying the "volume morph" command, I have utilized the "color near atoms" option to assign colors to the visualization. However, after executing the "volume morph" command, the previously assigned colors are reset to a default single color.

I am reaching out to seek guidance on resolving this issue. Your insights and advice would be greatly appreciated.

Thank you for your attention to this matter, and I eagerly await your response.

Best regards,

Shin-Fu

 

Shin-Fu Chen, Ph.D.

Postdoctoral Fellow

Department of Biochemistry and Molecular Biology

McGovern Medical School

University of Texas Health Science Center Houston

6431 Fannin St | MSB 6.326 | Houston, Texas 77030 

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